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1

MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data

Pabinger, S., Snajder, R., Hardiman, T., Willi, M., Dander, A., Trajanoski, Z.

Journal:

Year:

2014

Language:

english

File:

PDF, 497 KB

english, 2014

2

Mutational and Antigenic Landscape in Tumor Progression and Cancer Immunotherapy

Vitale, Ilio, Sistigu, Antonella, Manic, Gwenola, Rudqvist, Nils-Petter, Trajanoski, Zlatko, Galluzzi, Lorenzo

Journal:

Trends in Cell Biology

Year:

2019

Language:

english

File:

PDF, 2.70 MB

english, 2019

3

Computational genomics tools for dissecting tumour–immune cell interactions

Hackl, Hubert, Charoentong, Pornpimol, Finotello, Francesca, Trajanoski, Zlatko

Journal:

Nature Reviews Genetics

Year:

2016

Language:

english

File:

PDF, 1.94 MB

english, 2016

4

Continuous measurement of subcutaneous lactate concentration during exercise by combining open-flow microperfusion and thin-film lactate sensors

M Ellmerer, L Schaupp, Z Trajanoski, G Jobst, I Moser, G Urban, F Skrabal, P Wach

Journal:

Biosensors and Bioelectronics

Year:

1998

Language:

english

File:

PDF, 371 KB

english, 1998

5

MEMOSys: Bioinformatics platform for genome-scale metabolic models

Stephan Pabinger, Robert Rader, Rasmus Agren, Jens Nielsen, Zlatko Trajanoski

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 1.42 MB

english, 2011

6

Oxytocin Controls Differentiation of Human Mesenchymal Stem Cells and Reverses Osteoporosis

Christian Elabd, Armelle Basillais, Hélène Beaupied, Véronique Breuil, Nicole Wagner, Marcel Scheideler, Laure-Emmanuelle Zaragosi, Florence Massiéra, Emmanuel Lemichez, Zlatko Trajanoski, Georges Car

Journal:

Year:

2008

Language:

english

File:

PDF, 1.46 MB

english, 2008

7

Differential transcriptional modulation of biological processes in adipocyte triglyceride lipase and hormone-sensitive lipase-deficient mice

Montserrat Pinent, Hubert Hackl, Thomas Rainer Burkard, Andreas Prokesch, Christine Papak, Marcel Scheideler, Günter Hämmerle, Rudolf Zechner, Zlatko Trajanoski, Juliane Gertrude Strauss

Journal:

Year:

2008

Language:

english

File:

PDF, 1.97 MB

english, 2008

8

LPL-mediated lipolysis of VLDL induces an upregulation of AU-rich mRNAs and an activation of HuR in endothelial cells

Marisa M. O. Tschernatsch, Bernhard Mlecnik, Zlatko Trajanoski, Rudolf Zechner, Robert Zimmermann

Journal:

Atherosclerosis

Year:

2006

Language:

english

File:

PDF, 382 KB

english, 2006

9

Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade

Charoentong, Pornpimol, Finotello, Francesca, Angelova, Mihaela, Mayer, Clemens, Efremova, Mirjana, Rieder, Dietmar, Hackl, Hubert, Trajanoski, Zlatko

Journal:

Year:

2017

Language:

english

File:

PDF, 4.68 MB

english, 2017

10

The Effect of Adjacent Materials on the Propagation of Phonon Polaritons in Hexagonal Boron Nitride

Kim, Kris S, Trajanoski, Daniel, Ho, Kevin, Gilburd, Leonid, Maiti, Aniket, van der Velden, Luuk, de Beer, Sissi, Walker, Gilbert C

Journal:

The Journal of Physical Chemistry Letters

Year:

2017

Language:

english

File:

PDF, 1.05 MB

english, 2017

11

Artificial intelligence and cancer

Troyanskaya, Olga, Trajanoski, Zlatko, Carpenter, Anne, Thrun, Sebastian, Razavian, Narges, Oliver, Nuria

Journal:

Year:

2020

Language:

english

File:

PDF, 792 KB

english, 2020

12

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

Sturm, Gregor, Szabo, Tamas, Fotakis, Georgios, Haider, Marlene, Rieder, Dietmar, Trajanoski, Zlatko, Finotello, Francesca, Mathelier, Anthony

Journal:

Year:

2020

File:

PDF, 1.76 MB

2020

13

Book Review: Unraveling Lipid Metabolism with Microarrays edited by Alvin Berger and Matthew A. Roberts

Zlatko Trajanoski

Journal:

European Journal of Lipid Science and Technology

Year:

2006

Language:

english

File:

PDF, 25 KB

english, 2006

14

microRNAs in acute myeloid leukemia: Expression patterns, correlations with genetic and clinical parameters, and prognostic significance

Rotraud Wieser, Marcel Scheideler, Hubert Hackl, Maria Engelmann, Christine Schneckenleithner, Karin Hiden, Christine Papak, Zlatko Trajanoski, Heinz Sill, Christa Fonatsch

Journal:

Genes, Chromosomes and Cancer

Year:

2010

Language:

english

File:

PDF, 118 KB

english, 2010

15

Evolution of genomic instability in diethylnitrosamine-induced hepatocarcinogenesis in mice

Kristina Aleksic, Carolin Lackner, Jochen B. Geigl, Martina Schwarz, Martina Auer, Peter Ulz, Maria Fischer, Zlatko Trajanoski, Marcus Otte, Michael R. Speicher

Journal:

Year:

2011

Language:

english

File:

PDF, 2.28 MB

english, 2011

16

Portable device for continuous fractionated blood sampling and continuous ex vivo blood glucose monitoring

Zlatko Trajanoski, Paul Wach, Robert Gfrerer, Gerhard Jobst, Gerald Urban, Peter Kotanko, Falko Skrabal

Journal:

Biosensors and Bioelectronics

Year:

1996

Language:

english

File:

PDF, 650 KB

english, 1996

17

Proteomic analysis of human cataract aqueous humour: Comparison of one-dimensional gel LCMS with two-dimensional LCMS of unlabelled and iTRAQ®-labelled specimens

Keiryn L. Bennett, Marion Funk, Marion Tschernutter, Florian P. Breitwieser, Melanie Planyavsky, Ceereena Ubaida Mohien, André Müller, Zlatko Trajanoski, Jacques Colinge, Giulio Superti-Furga, Ursula

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 739 KB

english, 2011

18

Mass producible miniaturized flow through a device with a biosensor array

G. Jobst, I. Moser, P. Svasek, M. Varahram, Z. Trajanoski, P. Wach, P. Kotanko, F. Skrabal, G. Urban

Journal:

Sensors and Actuators B: Chemical

Year:

1997

Language:

english

File:

PDF, 362 KB

english, 1997

19

Novel system for real-time ex vivo lactate monitoring in human whole blood

R.J. Gfrerer, G.A. Brunner, Z. Trajanoski, L. Schaupp, G. Sendlhofer, F. Skrabal, G. Jobst, I. Moser, G. Urban, T.R. Pieber, P. Wach

Journal:

Biosensors and Bioelectronics

Year:

1998

Language:

english

File:

PDF, 258 KB

english, 1998

20

Neural predictive controller for closed-loop control of glucose using the subcutaneous route: A simulation study

Z. Trajanoski, W. Regittnig, P. Wach

Journal:

Control Engineering Practice

Year:

1997

Language:

english

File:

PDF, 303 KB

english, 1997

21

GiSAO.db: a database for ageing research

Edith Hofer, Gerhard T Laschober, Matthias Hackl, Gerhard G Thallinger, Günter Lepperdinger, Johannes Grillari, Pidder Jansen-Dürr, Zlatko Trajanoski

Journal:

Year:

2011

Language:

english

File:

PDF, 693 KB

english, 2011

22

Transcriptional regulatory program in wild-type and retinoblastoma gene-deficient mouse embryonic fibroblasts during adipocyte differentiation

Robab Hakim-Weber, Anne-M Krogsdam, Claus Jørgensen, Maria Fischer, Andreas Prokesch, Juliane G Bogner-Strauss, Stefan R Bornstein, Jacob B Hansen, Lise Madsen, Karsten Kristiansen, Zlatko Trajanoski,

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 1.54 MB

english, 2011

23

MASPECTRAS 2: An integration and analysis platform for proteomic data

Ceereena Ubaida Mohien, Jürgen Hartler, Florian Breitwieser, Uwe Rix, Lily Remsing Rix, Georg E. Winter, Gerhard G. Thallinger, Keiryn L. Bennett, Giulio Superti-Furga, Zlatko Trajanoski, Jacques Coli

Journal:

Year:

2010

Language:

english

File:

PDF, 236 KB

english, 2010

24

YPL.db2: the yeast protein localization database, version 2.0

Mathias Kals, Klaus Natter, Gerhard G. Thallinger, Zlatko Trajanoski, Sepp D. Kohlwein

Journal:

Year:

2005

Language:

english

File:

PDF, 356 KB

english, 2005

25

Bioinformatik — von der molekularen Biologie zu Supercomputern

Journal:

e & i Elektrotechnik und Informationstechnik

Year:

2003

Language:

german

File:

PDF, 1007 KB

german, 2003

26

Arsenic trioxide induces apoptosis preferentially in B-CLL cells of patients with unfavourable prognostic factors including del17p13

Olaf Merkel, Christoph Heyder, Daniela Asslaber, Frank Hamacher, Inge Tinhofer, Claudia Holler, Markus Stöcher, Andreas Prokesch, Christine Papak, Marcel Scheideler, Zlatko Trajanoski, Richard Greil

Journal:

Journal of Molecular Medicine

Year:

2008

Language:

english

File:

PDF, 532 KB

english, 2008

27

SNP array-based whole genome homozygosity mapping as the first step to a molecular diagnosis in patients with Charcot-Marie-Tooth disease

Carina Fischer, Slave Trajanoski, Lea Papić, Christian Windpassinger, Günther Bernert, Michael Freilinger, Maria Schabhüttl, Mine Arslan-Kirchner, Poupak Javaher-Haghighi, Barbara Plecko, Jan Senderek

Journal:

Journal of Neurology

Year:

2012

Language:

english

File:

PDF, 593 KB

english, 2012

28

A new platform linking chromosomal and sequence information

Agata Kowalska, Eva Bozsaky, Thomas Ramsauer, Dietmar Rieder, Gabriela Bindea, Thomas Lörch, Zlatko Trajanoski, Peter F. Ambros

Journal:

Chromosome Research

Year:

2007

Language:

english

File:

PDF, 682 KB

english, 2007

29

Heterogeneity of Prostate-Specific Membrane Antigen (PSMA) Expression in Prostate Carcinoma with Distant Metastasis

Sebastian Mannweiler, Peter Amersdorfer, Slave Trajanoski, Jonathan A. Terrett, David King, Gabor Mehes

Journal:

Pathology & Oncology Research

Year:

2009

Language:

english

File:

PDF, 260 KB

english, 2009

30

The phosphatidylethanolamine level of yeast mitochondria is affected by the mitochondrial components Oxa1p and Yme1p

Ruth Nebauer, Irmgard Schuiki, Birgit Kulterer, Zlatko Trajanoski, Günther Daum

Journal:

Year:

2007

Language:

english

File:

PDF, 260 KB

english, 2007

31

Glucocorticoid-regulated microRNAs and mirtrons in acute lymphoblastic leukemia

Rainer, J, Ploner, C, Jesacher, S, Ploner, A, Eduardoff, M, Mansha, M, Wasim, M, Panzer-Grümayer, R, Trajanoski, Z, Niederegger, H

Journal:

Year:

2009

Language:

english

File:

PDF, 298 KB

english, 2009

32

Grape-seed derived procyanidins interfere with adipogenesis of 3T3-L1 cells at the onset of differentiation

Pinent, M, Bladé, M C, Salvadó, M J, Arola, L, Hackl, H, Quackenbush, J, Trajanoski, Z, Ardévol, A

Journal:

International Journal of Obesity

Year:

2005

Language:

english

File:

PDF, 173 KB

english, 2005

33

Portable system for on-line continuous ex vivo monitoring of subcutaneous tissue glucose using open tissue perfusion

F. Skrabal, Z. Trajanoski, H. Kontscheider, P. Kotanko, P. Wach

Journal:

Medical and Biological Engineering and Computing

Year:

1995

Language:

english

File:

PDF, 318 KB

english, 1995

34

Numerical approximation of mathematical model for absorption of subcutaneously injected insulin

P. Wach, Z. Trajanoski, P. Kotanko, F. Skrabal

Journal:

Medical and Biological Engineering and Computing

Year:

1995

Language:

english

File:

PDF, 898 KB

english, 1995

35

Fuzzy filter for state estimation of a glucoregulatory system

Z. Trajanoski, P. Wach

Journal:

Computer Methods and Programs in Biomedicine

Year:

1996

Language:

english

File:

PDF, 980 KB

english, 1996

36

Hypochlorite modification of sphingomyelin generates chlorinated lipid species that induce apoptosis and proteome alterations in dopaminergic PC12 neurons in vitro

Christoph Nusshold, Manfred Kollroser, Harald Köfeler, Gerald Rechberger, Helga Reicher, Andreas Üllen, Eva Bernhart, Sabine Waltl, Ingrid Kratzer, Albin Hermetter, Hubert Hackl, Zlatko Trajanoski, An

Journal:

Free Radical Biology and Medicine

Year:

2010

Language:

english

File:

PDF, 1.79 MB

english, 2010

37

The impact of PCR-generated recombination on diversity estimation of mixed viral populations by deep sequencing

Irene Görzer, Christian Guelly, Slave Trajanoski, Elisabeth Puchhammer-Stöckl

Journal:

Journal of Virological Methods

Year:

2010

Language:

english

File:

PDF, 188 KB

english, 2010

38

Information technology solutions for integration of biomolecular and clinical data in the identification of new cancer biomarkers and targets for therapy

Hubert Hackl, Gernot Stocker, Pornpimol Charoentong, Bernhard Mlecnik, Gabriela Bindea, Jerome Galon, Zlatko Trajanoski

Journal:

Pharmacology & Therapeutics

Year:

2010

Language:

english

File:

PDF, 605 KB

english, 2010

39

Simulation studies on neural predictive control of glucose using the subcutaneous route

Zlatko Trajanoski, Werner Regittnig, Paul Wach

Journal:

Computer Methods and Programs in Biomedicine

Year:

1998

Language:

english

File:

PDF, 105 KB

english, 1998

40

New trends in bioinformatics: from genome sequence to personalized medicine

Robert Molidor, Alexander Sturn, Michael Maurer, Zlatko Trajanoski

Journal:

Experimental Gerontology

Year:

2003

Language:

english

File:

PDF, 156 KB

english, 2003

41

Neural predictive controller for insulin delivery using the subcutaneous route

Trajanoski, Z., Wach, P.

Journal:

IEEE Transactions on Biomedical Engineering

Year:

1998

Language:

english

File:

PDF, 322 KB

english, 1998

42

QPCR: Application for real-time PCR data management and analysis

Stephan Pabinger, Gerhard G Thallinger, René Snajder, Heiko Eichhorn, Robert Rader, Zlatko Trajanoski

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 959 KB

english, 2009

43

iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis

Gernot Stocker, Maria Fischer, Dietmar Rieder, Gabriela Bindea, Simon Kainz, Michael Oberstolz, James G McNally, Zlatko Trajanoski

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.11 MB

english, 2009

44

MARS: Microarray analysis, retrieval, and storage system

Michael Maurer, Robert Molidor, Alexander Sturn, Juergen Hartler, Hubert Hackl, Gernot Stocker, Andreas Prokesch, Marcel Scheideler, Zlatko Trajanoski

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.91 MB

english, 2005

45

A quantization method based on threshold optimization for microarray short time series

Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna Toffolo, Sreekumaran K Nair, Zlatko Trajanoski, Claudio Cobelli

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 262 KB

english, 2005

46

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

Jürgen Hartler, Gerhard G Thallinger, Gernot Stocker, Alexander Sturn, Thomas R Burkard, Erik Körner, Robert Rader, Andreas Schmidt, Karl Mechtler, Zlatko Trajanoski

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 505 KB

english, 2007

47

TAMEE: data management and analysis for tissue microarrays

Gerhard G Thallinger, Kerstin Baumgartner, Martin Pirklbauer, Martina Uray, Elke Pauritsch, Gabor Mehes, Charles R Buck, Kurt Zatloukal, Zlatko Trajanoski

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.53 MB

english, 2007

48

Data integration and exploration for the identification of molecular mechanisms in tumor-immune cells interaction

Bernhard Mlecnik, Fatima Sanchez-Cabo, Pornpimol Charoentong, Gabriela Bindea, Franck Pagès, Anne Berger, Jerome Galon, Zlatko Trajanoski

Journal:

Year:

2010

Language:

english

File:

PDF, 221 KB

english, 2010

49

GOLD.db: genomics of lipid-associated disorders database

Hubert Hackl, Michael Maurer, Bernhard Mlecnik, Jürgen Hartler, Gernot Stocker, Diego Miranda-Saavedra, Zlatko Trajanoski

Journal:

Year:

2004

Language:

english

File:

PDF, 557 KB

english, 2004

50

Gene expression profiling of human mesenchymal stem cells derived from bone marrow during expansion and osteoblast differentiation

Birgit Kulterer, Gerald Friedl, Anita Jandrositz, Fatima Sanchez-Cabo, Andreas Prokesch, Christine Paar, Marcel Scheideler, Reinhard Windhager, Karl-Heinz Preisegger, Zlatko Trajanoski

Journal:

Year:

2007

Language:

english

File:

PDF, 1.72 MB

english, 2007

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